Function reference • agriutilities

Data Analysis Pipeline

Identify the design and fit the models automatically

check_design_met(): Check Experimental Design

single_trial_analysis(): Single Trial Analysis

met_analysis(): Multi-Environmental Trial Analysis

print(<checkAgri>): Print an object of class checkAgri

print(<smaAgri>): Print an object of class smaAgri

print(<metAgri>): Print an object of class metAgri

plot(<checkAgri>): Plot an object of class checkAgri

plot(<smaAgri>): Plot an object of class smaAgri

plot(<metAgri>): Plot an object of class metAgri

Lme4

Additional functions for lme4 models

h_cullis(): Cullis heritability for lme4 models

ASReml

Additional functions for ASReml models

extract_vcov(): Extract Variance-Covariance from ASReml-R

extract_rcov(): Extract Residual Variance-Covariance from ASReml-R

fa_summary(): Factor Analytic Summary

heritability_fa(): Heritability for Factor Analytic Models in ASReml-R

ic_reml_asr(): Find the AIC and BIC for a set of models fitted using asreml

SpATS

Additional functions for SpATS models

h_cullis_spt(): Calculate Cullis heritabilities from SpATS objects

ic_reml_spt(): Find the AIC and BIC for a model fitted using SpATS

Others

check_connectivity(): Check connectivity between trials

covcor_heat(): Correlation Covariance Heatmap

gg_cor(): Triangular Correlation Plot

parameters_gg(): Genetic Gain Parameters

stability(): Stability Coefficients